About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11555212_11629738_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11555212 - 11629738
Intron Length:
74527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTTACT
Flanking Amino Acid:
AKPPEECKENELPYGWEKID
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
40.6
-1
3.2
54.1
45.6
Minor BPS
62.4
0.47
1.9
81.19
39.9

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689