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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_115837256_115853078_R

Intron Information:

Intron Rank:
135094
Intron Class:
major
Intron Phase:
Intron Coordinates:
115837256 - 115853078
Intron Length:
15823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
ACTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTACACTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
31.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
82.6
0.73
0.9
76.8
36.7
Minor 5ss
36.2
-1.6
3.3
50.7
41.2
Minor BPS
48.5
-0.1
1.9
63.21
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020054
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028603
115837160 - 115854524
17365