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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1158424_1159589_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1158424 - 1159589
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCCCCTCTAATT
Flanking Amino Acid:
VYFHCAAVTPAGCMYVHGGV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
48.9
-0
1.7
61.17
43.5

Associated Gene:

Gene:
KLHDC10
Ensembl Gene ID:
ENSAPLG00000004036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004157
1158214 - 1166378
8165