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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_115883832_115892808_R

Intron Information:

Intron Rank:
137424
Intron Class:
major
Intron Phase:
Intron Coordinates:
115883832 - 115892808
Intron Length:
8977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATCATGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTATTTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.2
0.57
1
65.4
44.8
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
62.4
0.47
1.6
78.29
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036645
115883705 - 115903165
19461
ENSAPLT00000032083
115872213 - 115892837
20625