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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_115892875_115902957_R

Intron Information:

Intron Rank:
137426
Intron Class:
major
Intron Phase:
Intron Coordinates:
115892875 - 115902957
Intron Length:
10083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
CATTATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTGCCTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.2
0.57
0.9
66.4
40.1
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
69.6
0.7
1.8
85.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036645
115883705 - 115903165
19461