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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116086472_116088983_F

Intron Information:

Intron Rank:
134113
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
116086472 - 116088983
Intron Length:
2512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAATGTCA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGCATTTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
56.9
36.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
39.7
-1.2
3.3
53.9
44.4
Minor BPS
45.9
-0.3
1.7
53.11
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022080
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039230
116085401 - 116089142
3742