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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116102426_116233639_R

Intron Information:

Intron Rank:
133612
Intron Class:
major
Intron Phase:
Intron Coordinates:
116102426 - 116233639
Intron Length:
131214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTTCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.4
39.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.3
0.59
0.9
73.5
36.9
Minor 5ss
31.6
-2.1
3.1
31.8
42.6
Minor BPS
52
0.14
2
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019159
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043205
116102182 - 116250450
148269