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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116233744_116250181_R

Intron Information:

Intron Rank:
133613
Intron Class:
major
Intron Phase:
Intron Coordinates:
116233744 - 116250181
Intron Length:
16438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
86.4
0.82
0.6
85.3
22
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019159
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043205
116102182 - 116250450
148269