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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11629797_11637368_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11629797 - 11637368
Intron Length:
7572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
AAATTTTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CAATTTTTAATC
Flanking Amino Acid:
DDPIYGTYYVDHINRRTQFE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.9
0.65
0.9
70.2
44.7
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
63.9
0.41
1.2
63.37
36.6

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689