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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11639114_11671134_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11639114 - 11671134
Intron Length:
32021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TTGTCACTATGT
Flanking Amino Acid:
PAAQDGKMETGDVIVYINEV
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
44.4
-0.3
2.3
69.78
46.6

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689