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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1164470_1165023_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1164470 - 1165023
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTATG
5'SS Class:
major
3'SS Sequence:
CTGTCTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCAACAA
U12 Branch Point Sequence:
CTCGCAGCAACA
Flanking Amino Acid:
YMPRELASMSLVLHGNNLLV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
72.9
44.2
Major BPS
42.7
-0.4
1.1
43.3
37.8
Major PPT
79.8
0.67
0.8
72.4
37.7
Minor 5ss
39.7
-1.2
3
49.9
39.9
Minor BPS
40.2
-0.7
2.3
52.1
45.8

Associated Gene:

Gene:
KLHDC10
Ensembl Gene ID:
ENSAPLG00000004036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004157
1158214 - 1166378
8165