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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116513879_116541252_R

Intron Information:

Intron Rank:
135577
Intron Class:
major
Intron Phase:
Intron Coordinates:
116513879 - 116541252
Intron Length:
27374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.8
35.1
Major BPS
76.2
0.65
1
67
39.8
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
37
-1.5
2.8
43.2
43.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020366
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042914
116513822 - 116542265
28444