Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116692939_116700140_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116692939 - 116700140

Intron Length:

7202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTATTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTCTTATTAATA

Flanking Amino Acid:

IDSVLIATWLGLDPSQFRVH

Intron Amino Acid Position:

1258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

100

1.18

0.6

100

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

76.9

0.6

0.9

74.1

34.3

Minor 5ss

41.7

-0.9

2.9

59.7

44.8

Minor BPS

67.4

0.54

1.5

75.76

35.9

Associated Gene:

Gene:

POLA1

Ensembl Gene ID:

ENSAPLG00000008944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009433

116579111 - 116778480

199370