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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11671771_11700482_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11671771 - 11700482
Intron Length:
28712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
SETSLIIHRGGFFSPWKTPK
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.3
0.84
0.8
85.7
33.4
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689