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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116746044_116746274_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116746044 - 116746274
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
GTTGTATCATTT
Flanking Amino Acid:
PDLNPDLYLQYDIRQKALKL
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
42.8
-0.4
2
61.54
42.7

Associated Gene:

Gene:
POLA1
Ensembl Gene ID:
ENSAPLG00000008944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009433
116579111 - 116778480
199370