Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116748323_116748822_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116748323 - 116748822

Intron Length:

500

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

AACTCTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTTTGTTTAAAC

Flanking Amino Acid:

AGGLVLDPKVGFYDKFILLL

Intron Amino Acid Position:

868

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.8

39.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

69.3

0.43

0.9

66.1

39.9

Minor 5ss

40.1

-1.1

3.2

57.3

46.8

Minor BPS

66.3

0.49

1.8

79.33

Associated Gene:

Gene:

POLA1

Ensembl Gene ID:

ENSAPLG00000008944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009433

116579111 - 116778480

199370