Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116750154_116750484_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116750154 - 116750484

Intron Length:

331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTACATTTT

5'SS Class:

major

3'SS Sequence:

CCCCACTCTATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

TTTGCTATAAAA

Flanking Amino Acid:

QITNISGNVMSRTMMGGRSE

Intron Amino Acid Position:

796

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

74.1

37.1

Major BPS

68.1

0.45

58.1

38.5

Major PPT

67.6

0.4

0.8

60.5

29.2

Minor 5ss

44.6

-0.6

3.2

63.7

Minor BPS

57.3

0.23

1.8

73.43

38.3

Associated Gene:

Gene:

POLA1

Ensembl Gene ID:

ENSAPLG00000008944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009433

116579111 - 116778480

199370