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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116753979_116754705_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116753979 - 116754705
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
GGTCATTGAAAT
Flanking Amino Acid:
YDFKEAIKKKNAKIEIAATE
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
79.8
0.67
0.8
77.9
30.9
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
46.8
-0.1
1.7
62.95
40

Associated Gene:

Gene:
POLA1
Ensembl Gene ID:
ENSAPLG00000008944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009433
116579111 - 116778480
199370