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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116754768_116755950_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116754768 - 116755950
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATGTATGTAAAA
Flanking Amino Acid:
PQPPFQTHFCVVSKPNDCIF
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
45.7
-0.3
2.2
59.71
40.1

Associated Gene:

Gene:
POLA1
Ensembl Gene ID:
ENSAPLG00000008944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009433
116579111 - 116778480
199370