Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116757452_116758967_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

116757452 - 116758967

Intron Length:

1516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTATGGTGC

5'SS Class:

weak_major

3'SS Sequence:

GTTTTTTCCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATGAA

U12 Branch Point Sequence:

ATTCCCAGAAGA

Flanking Amino Acid:

GPCWLEIKNPQPSNQSVSWC

Intron Amino Acid Position:

523

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.9

0.33

1.3

57.4

42.6

Major BPS

49.9

-0

1.2

43.7

39.2

Major PPT

81.9

0.72

0.7

81.5

30.5

Minor 5ss

44.5

-0.6

3.1

57.1

41.5

Minor BPS

48.1

-0.1

65.72

39.9

Associated Gene:

Gene:

POLA1

Ensembl Gene ID:

ENSAPLG00000008944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009433

116579111 - 116778480

199370