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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116766449_116766913_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116766449 - 116766913
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTCTTTATA
Flanking Amino Acid:
RTVYLLPRETEIDLSTGKET
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.8
0.85
0.6
84
24.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
65.4
0.48
1.6
74.24
37.6

Associated Gene:

Gene:
POLA1
Ensembl Gene ID:
ENSAPLG00000008944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009433
116579111 - 116778480
199370