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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116775569_116775829_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116775569 - 116775829
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTATCTTATCT
Flanking Amino Acid:
IASAGKKNTDKTVDLSKDDL
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
86.4
0.82
0.8
80.9
30.7
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
58.9
0.36
1.7
72.94
43.8

Associated Gene:

Gene:
POLA1
Ensembl Gene ID:
ENSAPLG00000008944
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009433
116579111 - 116778480
199370