Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116776791_116777271_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116776791 - 116777271

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTATACCAATT

Flanking Amino Acid:

RQDDDWIVDDDGIGYIEDGR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

26.1

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

78.2

0.64

76.9

42.1

Minor 5ss

39.7

-1.2

2.8

45.9

43.7

Minor BPS

45.5

-0.2

70.89

39.8

Associated Gene:

Gene:

POLA1

Ensembl Gene ID:

ENSAPLG00000008944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009433

116579111 - 116778480

199370