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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116811876_116814032_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116811876 - 116814032
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
ACTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATATATTAATC
Flanking Amino Acid:
AKELNVSFINEKKYRFQNQV
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68
0.41
1
63.8
40.2
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
59.9
0.29
1.6
69.35
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010728
116792218 - 116814307
22090