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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116829186_116830284_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116829186 - 116830284
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
GATATCTTACTG
Flanking Amino Acid:
VGSDAVIYLKALSSESFERL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
78
0.63
0.8
73.5
31.7
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
49.5
-0.1
1.7
53.56
41.5

Associated Gene:

Gene:
PDK3
Ensembl Gene ID:
ENSAPLG00000010492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010981
116829042 - 116881150
52109