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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116835037_116835247_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116835037 - 116835247
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATGTTTAAAA
Flanking Amino Acid:
TLGKEDLSIKISDQGGGVPL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.7
81.8
29.8
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
55.2
0.16
1.9
66.24
39.9

Associated Gene:

Gene:
PDK3
Ensembl Gene ID:
ENSAPLG00000010492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010981
116829042 - 116881150
52109