Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116835350_116836160_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116835350 - 116836160

Intron Length:

811

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTAACTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTTCTTTTAACT

Flanking Amino Acid:

LFHMLFELFKNSMRATVELH

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

73.2

39.3

Major BPS

89.7

0.98

0.7

89.9

Major PPT

0.72

0.8

33.1

Minor 5ss

39.2

-1.2

3.1

52.5

44.7

Minor BPS

81.3

1.06

92.89

28.4

Associated Gene:

Gene:

PDK3

Ensembl Gene ID:

ENSAPLG00000010492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010981

116829042 - 116881150

52109