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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116837813_116841452_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116837813 - 116841452
Intron Length:
3640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAAGT
Flanking Amino Acid:
PNCNVAEVVKDAYETAKMLC
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
76.7
31.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
59.2
0.37
1.9
80.09
42.1

Associated Gene:

Gene:
PDK3
Ensembl Gene ID:
ENSAPLG00000010492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010981
116829042 - 116881150
52109