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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116850701_116860754_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116850701 - 116860754
Intron Length:
10054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
NRPSVGLVQSWYMQSFLELL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
PDK3
Ensembl Gene ID:
ENSAPLG00000010492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010981
116829042 - 116881150
52109