About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116909994_116910573_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116909994 - 116910573
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTTGTTTGATT
Flanking Amino Acid:
WTNGNYSLSDLSPEGAAIWI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.7
85.2
28.8
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
62.5
0.48
1.7
80.58
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011421
116907727 - 116915912
8186