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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116910686_116913232_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116910686 - 116913232
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTACCA
Flanking Amino Acid:
CLCLPGVRITRQTLFWLKLG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.9
78.3
39.6
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
66.5
0.51
1.5
75.62
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011421
116907727 - 116915912
8186