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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116940774_116942254_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116940774 - 116942254
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATGAAAA
Flanking Amino Acid:
RRPESRQYQTAIIIGPDGHP
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
46.7
-0.2
2.2
64.53
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011546
116939587 - 116953931
14345