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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116942396_116944949_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116942396 - 116944949
Intron Length:
2554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CTTATCTCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACTTTTTAACT
Flanking Amino Acid:
FMPIAWAAAYGNNSDGIESR
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.1
0.45
0.9
70.2
36.3
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
72.5
0.78
1.1
78.76
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011546
116939587 - 116953931
14345