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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116945085_116945176_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116945085 - 116945176
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
NDSQHEDEDLNVAEIADEVY
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.9
0.81
0.6
80.5
31.5
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011546
116939587 - 116953931
14345