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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116945321_116945519_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116945321 - 116945519
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTTTCCTAACT
Flanking Amino Acid:
FKADPGEDDLGGTVDVVESE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
75.5
40.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.8
0.51
0.9
68.1
37.8
Minor 5ss
33.7
-1.9
3.2
48.4
47.1
Minor BPS
72.7
0.79
1.6
89.41
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011546
116939587 - 116953931
14345