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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116953391_116953842_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116953391 - 116953842
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTCAG
5'SS Class:
major
3'SS Sequence:
TTATGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TACGATTTAAAC
Flanking Amino Acid:
HEPNAFFDPTGADAAHMDGD
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
61.5
44.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
35.1
-1.7
2.7
40.9
45.4
Minor BPS
49
-0
1.7
57.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011546
116939587 - 116953931
14345