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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116991577_116992477_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
116991577 - 116992477
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTGTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTTTTCACCT
Flanking Amino Acid:
GGSILKGVLKVGQEIEVRPG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
78.8
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.6
0.37
1
66.8
38.4
Minor 5ss
68.6
0.63
2.3
82.3
37.5
Minor BPS
50
0.08
1.8
69.47
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011402
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011967
116987994 - 116998971
10978