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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116992573_116993416_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116992573 - 116993416
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGGCTCTTAAAT
Flanking Amino Acid:
RDFTSEPRLIVIRSFDVNKP
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
64.6
0.54
1.4
75.4
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011402
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011967
116987994 - 116998971
10978