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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116994273_116995456_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116994273 - 116995456
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
GTTCCTATATCA
Flanking Amino Acid:
AVMDAALLLIAGNESCPQPQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
49.8
-0
1.9
66.76
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011402
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011967
116987994 - 116998971
10978