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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116997284_116997790_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116997284 - 116997790
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
TTTTAAACCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAACC
Flanking Amino Acid:
VISRQATINIGTIGHVAHGK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.45
0.9
63.7
36.8
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
64.6
0.44
1.6
74.15
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011402
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011967
116987994 - 116998971
10978