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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_116997855_116998902_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116997855 - 116998902
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCCTTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATCTCCTTCATA
Flanking Amino Acid:
HLSRQDLGSLDVTKLTPLSP
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
79.2
0.72
1
75
40
Major PPT
77.6
0.62
0.8
72.2
31.4
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
65.4
0.48
1.7
73.28
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011402
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011967
116987994 - 116998971
10978