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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117039760_117042122_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
117039760 - 117042122
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTAATATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAACC
Flanking Amino Acid:
AKKELLKIDELSLYSSPARE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
71.7
0.49
0.9
64.9
40
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
72
0.67
1.2
73.03
38.7

Associated Gene:

Gene:
APOO
Ensembl Gene ID:
ENSAPLG00000012043
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012548
117039700 - 117055922
16223