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Intron Name: Anas_platyrhynchos_platyrhynchos_1_117042243_117045534_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117042243 - 117045534

Intron Length:

3292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAATGG

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

TATCCATTTACC

Flanking Amino Acid:

AMEPYTAWCQDLYAKAKPQL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

58.4

41.4

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

92.2

0.95

0.5

92.5

17.5

Minor 5ss

42.8

-0.8

56.2

Minor BPS

56.2

0.18

1.9

71.06

39.4

Associated Gene:

Gene:

APOO

Ensembl Gene ID:

ENSAPLG00000012043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027029

117042168 - 117057222

15055

ENSAPLT00000012548

117039700 - 117055922

16223