Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117046689_117049459_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117046689 - 117049459

Intron Length:

2771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTGTGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TATATTCTAACA

Flanking Amino Acid:

AGILGLFLARGSKIKKLVYP

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.4

32.7

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

63.7

0.31

1.1

58.7

45.5

Minor 5ss

-2.1

3.1

39.6

46.4

Minor BPS

56.9

0.21

1.7

69.7

36.1

Associated Gene:

Gene:

APOO

Ensembl Gene ID:

ENSAPLG00000012043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012548

117039700 - 117055922

16223

ENSAPLT00000027029

117042168 - 117057222

15055