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Intron Name: Anas_platyrhynchos_platyrhynchos_1_117049552_117055754_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117049552 - 117055754

Intron Length:

6203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TGCTTTGTAATT

Flanking Amino Acid:

YPQQAVAVAKVAGTQLYDWS

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

1.2

75.8

34.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

76.5

0.6

78.1

34.2

Minor 5ss

28.4

-2.5

34.8

41.6

Minor BPS

52.3

0.15

71.21

40.9

Associated Gene:

Gene:

APOO

Ensembl Gene ID:

ENSAPLG00000012043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027029

117042168 - 117057222

15055

ENSAPLT00000012548

117039700 - 117055922

16223