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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11705524_11720498_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11705524 - 11720498
Intron Length:
14975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CCCTTTACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TTTCCCTTTACA
Flanking Amino Acid:
EKSRAIYESRRPDYKELDVH
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.5
38.7
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
69.8
0.45
0.9
62.9
37.1
Minor 5ss
32.9
-1.9
3.2
35.5
41.5
Minor BPS
75.8
0.81
1.6
85.53
33

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689