Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117055863_117057210_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

117055863 - 117057210

Intron Length:

1348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

AAGAAATGAGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

GTATTTGCAACC

Flanking Amino Acid:

KKKSGKKDDKGSH*

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.6

33.3

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

43.6

-0.3

1.2

32.2

39.3

Minor 5ss

35.2

-1.7

49.5

46.3

Minor BPS

46.2

-0.3

2.1

59.58

39.6

Associated Gene:

Gene:

APOO

Ensembl Gene ID:

ENSAPLG00000012043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027029

117042168 - 117057222

15055