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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117078972_117079277_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117078972 - 117079277
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCAATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
ELPKEQWSSEGYSL*
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
70
0.45
0.9
65.3
34.8
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
SAT1
Ensembl Gene ID:
ENSAPLG00000012260
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043776
117078958 - 117079710
753