Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117085748_117090222_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

117085748 - 117090222

Intron Length:

4475

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTAG

5'SS Class:

major

3'SS Sequence:

TTGTTTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTTGCTTTGATT

Flanking Amino Acid:

GLPLLPDMAEVRSRLREIVG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

38.3

Major BPS

0.85

0.9

39.9

Major PPT

86.1

0.81

0.9

84.6

Minor 5ss

35.4

-1.7

3.3

45.9

49.3

Minor BPS

72.8

0.8

1.3

86.34

34.1

Associated Gene:

Gene:

ACOT9

Ensembl Gene ID:

ENSAPLG00000012395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012956

117085656 - 117104869

19214