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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_117087398_117090222_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
117087398 - 117090222
Intron Length:
2825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTAAT
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCTTTGATT
Flanking Amino Acid:
EGHLPIHVNNVRSRLREIVG
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
77.5
31.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
38.2
-1.3
2.7
47.2
42.9
Minor BPS
72.8
0.8
1.3
86.34
34.1

Associated Gene:

Gene:
ACOT9
Ensembl Gene ID:
ENSAPLG00000012395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029404
117085591 - 117107056
21466